Here is a list of all files with brief descriptions:
[detail level 12]
| ▼ src | |
| airr.cu | A collection of patching functions that add airr-format compatibility to cli.cu |
| codec.cu | A collection of conversion operations turning CDR3 strings into numerical representation |
| cub.cu | Listing of all GPU parallel primitives that use CUB library (everything other than map and expand) |
| generate_combination.cu | A single method which generates all possible deletions of a CDR3 string within a given Levenshtein threshold |
| kernel.cu | A collection of most GPU parallel primitives that is implemented as CUDA kernel (most map and expand operations) |
| stream.cu | Listing of low-level streaming and buffering module |
| xtn.cu | The core algorithm on a low-level abstraction concerning how buffers, streamings, and memory management techniques fit together |
| xtn.h | Listing of all shared data structures, constants, and exporting method |
| xtn_inner.cu | The core algorithm on the high-level abstraction concerning data manupulation operations in all 4 stream |
| xtn_overlap_inner.cu | A collection of patching functions that add repertoire-comparison functionality to xtn_overlap.cu |
