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| file | airr.cu |
| | A collection of patching functions that add airr-format compatibility to cli.cu.
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| file | codec.cu |
| | A collection of conversion operations turning CDR3 strings into numerical representation.
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| file | cub.cu |
| | Listing of all GPU parallel primitives that use CUB library (everything other than map and expand).
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| file | generate_combination.cu |
| | A single method which generates all possible deletions of a CDR3 string within a given Levenshtein threshold.
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| file | kernel.cu |
| | A collection of most GPU parallel primitives that is implemented as CUDA kernel (most map and expand operations).
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| file | stream.cu |
| | Listing of low-level streaming and buffering module.
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| file | xtn.cu |
| | The core algorithm on a low-level abstraction concerning how buffers, streamings, and memory management techniques fit together.
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| file | xtn.h [code] |
| | Listing of all shared data structures, constants, and exporting method.
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| file | xtn_inner.cu |
| | The core algorithm on the high-level abstraction concerning data manupulation operations in all 4 stream.
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| file | xtn_overlap_inner.cu |
| | A collection of patching functions that add repertoire-comparison functionality to xtn_overlap.cu.
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